>PUBLICATIONS  
  home [IG-CSG.org]
sitemap
imprint/disclaimer
 
 
    [RESEARCH PROJECTS]  [PUBLICATIONS]  [MEMBERS]  [NEWS & EVENTS]   
 
Coordinator:
PD Dr. Stefan Wiemann
German Cancer Research Center
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Phone: +49 6221 42 4646




search

Publications

  1. Walter, T., Held, M., Neumann, B., Heriche, J. K., Conrad, C., Pepperkok, R., Ellenberg, J., (2010) Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging. J Struct Biol, 170:1-9
    link to pubmed

  2. Uhlmann, S., Zhang, J.D., Mannsperger, H., Schwäger, A., Ward, A., Burmester, S., Riazalhosseini, Y., Korf, U., Wiemann, S., Sahin, Ö., (2010) miR-200bc/429 cluster targets PLCgamma1 and differentially regulates proliferation and EGF-driven invasion than miR-200a/141 in breast cancer. Oncogene, DOI: 10.1038/onc.2010.201:[Epub ahead of print]
    link to pubmed

  3. Subramanian, D., Laketa, V., Muller, R., Tischer, C., Zarbakhsh, S., Pepperkok, R., Schultz, C., (2010) Activation of membrane-permeant caged PtdIns(3)P induces endosomal fusion in cells. Nat Chem Biol, 6:324-6
    link to pubmed

  4. Rochet, N., Sterzing, F., Jensen, A. D., Dinkel, J., Herfarth, K. K., Schubert, K., Eichbaum, M. H., Schneeweiss, A., Sohn, C., Debus, J., Harms, W., (2010) Intensity-Modulated Whole Abdominal Radiotherapy After Surgery and Carboplatin/Taxane Chemotherapy for Advanced Ovarian Cancer: Phase I Study. Int J Radiat Oncol Biol Phys, 76:1382-9
    link to pubmed

  5. O'Donoghue, S. I., Gavin, A. C., Gehlenborg, N., Goodsell, D. S., Heriche, J. K., Nielsen, C. B., North, C., Olson, A. J., Procter, J. B., Shattuck, D. W., Walter, T., Wong, B., (2010) Visualizing biological data-now and in the future. Nat Methods, 7:S2-4
    link to pubmed

  6. Neumann, B., Walter, T., Heriche, J. K., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wunsche, A., Satagopam, V., Schmitz, M. H., Chapuis, C., Gerlich, D. W., Schneider, R., Eils, R., Huber, W., Peters, J. M., Hyman, A. A., Durbin, R., Pepperkok, R., Ellenberg, J., (2010) Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464:721-7
    link to pubmed

  7. Marme, F., Werft, W., Benner, A., Burwinkel, B., Sinn, P., Sohn, C., Lichter, P., Hahn, M., Schneeweiss, A., (2010) FGFR4 Arg388 genotype is associated with pathological complete response to neoadjuvant chemotherapy for primary breast cancer. Ann Oncol, :
    link to pubmed

  8. Haller, F., Von Heydebreck, A., Zhang, JD., Gunawan, B., Langer, C., Ramadori, G., Wiemann, S., Sahin, O, (2010) Localisation- and mutation-dependent microRNA (miRNA) expression signatures in gastrointestinal stromal tumors (GISTs), with a cluster of coexpressed miRNAs located at 14q32.31. J Pathol, 220:71-86
    link to pubmed

  9. Grecco, H. E., Roda-Navarro, P., Girod, A., Hou, J., Frahm, T., Truxius, D. C., Pepperkok, R., Squire, A., Bastiaens, P. I., (2010) In situ analysis of tyrosine phosphorylation networks by FLIM on cell arrays. Nat Methods, 7:467-72
    link to pubmed

  10. Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., Neuweger, H., Schneider, R., Tenenbaum, D., Gavin, A. C., (2010) Visualization of omics data for systems biology. Nat Methods, 7:S56-68
    link to pubmed

  11. Ebert, A. D., Laussmann, M., Wegehingel, S., Kaderali, L., Erfle, H., Reichert, J., Lechner, J., Beer, H. D., Pepperkok, R., Nickel, W., (2010) Tec-Kinase-mediated Phosphorylation of Fibroblast Growth Factor 2 Is Essential for Unconventional Secretion. Traffic, :
    link to pubmed

  12. Domschke, C., Schuetz, F., Sommerfeldt, N., Rom, J., Scharf, A., Sohn, C., Schneeweiss, A., Beckhove, P., (2010) Effects of distant metastasis and peripheral CA 15-3 on the induction of spontaneous T cell responses in breast cancer patients. Cancer Immunol Immunother, 59:479-86
    link to pubmed

  13. Brase, J. C., Mannsperger, H., Frohlich, H., Gade, S., Schmidt, C., Wiemann, S., Beissbarth, T., Schlomm, T., Sultmann, H., Korf, U., (2010) Increasing the sensitivity of reverse phase protein arrays by antibody-mediated signal amplification. Proteome Sci, 8:36
    link to pubmed

  14. Brase, J. C., Johannes, M., Schlomm, T., Falth, M., Haese, A., Steuber, T., Beissbarth, T., Kuner, R., Sultmann, H., (2010) Circulating miRNAs are correlated with tumor progression in prostate cancer. Int J Cancer, :
    link to pubmed

  15. Borner, K., Hermle, J., Sommer, C., Brown, N. P., Knapp, B., Glass, B., Kunkel, J., Torralba, G., Reymann, J., Beil, N., Beneke, J., Pepperkok, R., Schneider, R., Ludwig, T., Hausmann, M., Hamprecht, F., Erfle, H., Kaderali, L., Krausslich, H. G., Lehmann, M. J., (2010) From experimental setup to bioinformatics: an RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnol J, 5:39-49
    link to pubmed

  16. Zhang, J.D., Wiemann, S., (2009) KEGGgraph: a graph approach to KEGG PATHWAY in R and Bioconductor. Bioinformatics, 25:1470-1471
    link to pubmed

  17. Zeller, C., Frohlich, H., Tresch, A., (2009) A bayesian network view on nested effects models. EURASIP J Bioinform Syst Biol, :195272
    link to pubmed

  18. Untch, M., Mobus, V., Kuhn, W., Muck, B. R., Thomssen, C., Bauerfeind, I., Harbeck, N., Werner, C., Lebeau, A., Schneeweiss, A., Kahlert, S., von Koch, F., Petry, K. U., Wallwiener, D., Kreienberg, R., Albert, U. S., Luck, H. J., Hinke, A., Janicke, F., Konecny, G. E., (2009) Intensive dose-dense compared with conventionally scheduled preoperative chemotherapy for high-risk primary breast cancer. J Clin Oncol, 27:2938-45
    link to pubmed

  19. Tournaviti, S., Pietro, E. S., Terjung, S., Schafmeier, T., Wegehingel, S., Ritzerfeld, J., Schulz, J., Smith, D. F., Pepperkok, R., Nickel, W., (2009) Reversible phosphorylation as a molecular switch to regulate plasma membrane targeting of acylated SH4 domain proteins. Traffic, 10:1047-60
    link to pubmed

  20. Temple, G., Gerhard, D. S., Rasooly, R., Feingold, E. A., Good, P. J., Robinson, C., Mandich, A., Derge, J. G., Lewis, J., Shoaf, D., Collins, F. S., Jang, W., Wagner, L., Shenmen, C. M., Misquitta, L., Schaefer, C. F., Buetow, K. H., Bonner, T. I., Yankie, L., Ward, M., Phan, L., Astashyn, A., Brown, G., Farrell, C., Hart, J., Landrum, M., Maidak, B. L., Murphy, M., Murphy, T., Rajput, B., Riddick, L., Webb, D., Weber, J., Wu, W., Pruitt, K. D., Maglott, D., Siepel, A., Brejova, B., Diekhans, M., Harte, R., Baertsch, R., Kent, J., Haussler, D., Brent, M., Langton, L., Comstock, C. L., Stevens, M., Wei, C., van Baren, M. J., Salehi-Ashtiani, K., Murray, R. R., Ghamsari, L., Mello, E., Lin, C., Pennacchio, C., Schreiber, K., Shapiro, N., Marsh, A., Pardes, E., Moore, T., Lebeau, A., Muratet, M., Simmons, B., Kloske, D., Sieja, S., Hudson, J., Sethupathy, P., Brownstein, M., Bhat, N., Lazar, J., Jacob, H., Gruber, C. E., Smith, M. R., McPherson, J., Garcia, A. M., Gunaratne, P. H., Wu, J., Muzny, D., Gibbs, R. A., Young, A. C., Bouffard, G. G., Blakesley, R. W., Mullikin, J., Green, E. D., Dickson, M. C., Rodriguez, A. C., Grimwood, J., Schmutz, J., Myers, R. M., Hirst, M., Zeng, T., Tse, K., Moksa, M., Deng, M., Ma, K., Mah, D., Pang, J., Taylor, G., Chuah, E., Deng, A., Fichter, K., Go, A., Lee, S., Wang, J., Griffith, M., Morin, R., Moore, R. A., Mayo, M., Munro, S., Wagner, S., Jones, S. J., Holt, R. A., Marra, M. A., Lu, S., Yang, S., Hartigan, J., Graf, M., Wagner, R., Letovksy, S., Pulido, J. C., Robison, K., Esposito, D., Hartley, J., Wall, V. E., Hopkins, R. F., Ohara, O., Wiemann, S., (2009) The Completion of the Mammalian Gene Collection (MGC). Genome Res, 19:2324-2333
    link to pubmed

  21. Schuetz, F., Ehlert, K., Ge, Y., Schneeweiss, A., Rom, J., Inzkirweli, N., Sohn, C., Schirrmacher, V., Beckhove, P., (2009) Treatment of advanced metastasized breast cancer with bone marrow-derived tumour-reactive memory T cells: a pilot clinical study. Cancer Immunol Immunother, 58:887-900
    link to pubmed

  22. Sahin, O, Wiemann, S, (2009) Functional Genomics and Proteomics approaches to study the ERBB-network in cancer. FEBS Lett, 583:1766-1771
    link to pubmed

  23. Sahin, O., Froehlich, H., Loebke, C., Korf, U., Burmester, S., Majety, M., Thieffry, D., Chaouiya, C., Poustka, A., Wiemann, S., Beissbarth, T., Arlt, D., (2009) Modeling of ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance. BMC Systems Biology, 3:1
    link to pubmed

  24. Rom, J., von Minckwitz, G., Marme, F., Ataseven, B., Kozian, D., Sievert, M., Schlehe, B., Schuetz, F., Scharf, A., Kaufmann, M., Sohn, C., Schneeweiss, A., (2009) Phase I study of apoptosis gene modulation with oblimersen within preoperative chemotherapy in patients with primary breast cancer. Ann Oncol, 20:1829-35
    link to pubmed

  25. Lux, M. P., Hartmann, M., Jackisch, C., Raab, G., Schneeweiss, A., Possinger, K., Oyee, J., Harbeck, N., (2009) Cost-utility analysis for advanced breast cancer therapy in Germany: results of the fulvestrant sequencing model. Breast Cancer Res Treat, 117:305-17
    link to pubmed

  26. Ling, K. H., Hewitt, C. A., Beissbarth, T., Hyde, L., Banerjee, K., Cheah, P. S., Cannon, P. Z., Hahn, C. N., Thomas, P. Q., Smyth, G. K., Tan, S. S., Thomas, T., Scott, H. S., (2009) Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling. Genome Biol, 10:R104
    link to pubmed

  27. Laketa, V., Zarbakhsh, S., Morbier, E., Subramanian, D., Dinkel, C., Brumbaugh, J., Zimmermann, P., Pepperkok, R., Schultz, C., (2009) Membrane-permeant phosphoinositide derivatives as modulators of growth factor signaling and neurite outgrowth. Chem Biol, 16:1190-6
    link to pubmed

  28. Kuhner, S., van Noort, V., Betts, M. J., Leo-Macias, A., Batisse, C., Rode, M., Yamada, T., Maier, T., Bader, S., Beltran-Alvarez, P., Castano-Diez, D., Chen, W. H., Devos, D., Guell, M., Norambuena, T., Racke, I., Rybin, V., Schmidt, A., Yus, E., Aebersold, R., Herrmann, R., Bottcher, B., Frangakis, A. S., Russell, R. B., Serrano, L., Bork, P., Gavin, A. C., (2009) Proteome organization in a genome-reduced bacterium. Science, 326:1235-40
    link to pubmed

  29. Jones, A. R., Lister, A. L., Hermida, L., Wilkinson, P., Eisenacher, M., Belhajjame, K., Gibson, F., Lord, P., Pocock, M., Rosenfelder, H., Santoyo-Lopez, J., Wipat, A., Paton, N. W., (2009) Modeling and managing experimental data using FuGE. Omics, 13:239-51
    link to pubmed

  30. Heck, S., Rom, J., Thewes, V., Becker, N., Blume, B., Sinn, H. P., Deuschle, U., Sohn, C., Schneeweiss, A., Lichter, P., (2009) Estrogen-related receptor alpha expression and function is associated with the transcriptional coregulator AIB1 in breast carcinoma. Cancer Res, 69:5186-93
    link to pubmed

  31. Gilbert, D. F., Meinhof, T., Pepperkok, R., Runz, H., (2009) DetecTiff: a novel image analysis routine for high-content screening microscopy. J Biomol Screen, 14:944-55
    link to pubmed

  32. Frohlich, H., Tresch, A., Beissbarth, T., (2009) Nested effects models for learning signaling networks from perturbation data. Biom J, 51:304-23
    link to pubmed

  33. Eichbaum, M. H., Weiss, L. M., Bruckner, T., Schneeweiss, A., Sinn, H. P., Gebauer, G., Fersis, N., Kussmaul, J., Sohn, C., (2009) Prognostic impact of hemoglobin levels before and during carboplatin/taxane-based chemotherapy in patients with primary invasive epithelial ovarian cancer. Med Sci Monit, 15:CR156-63
    link to pubmed

  34. Eichbaum, M., Bischofs, E., Nehls, K., Schneeweiss, A., Sohn, C., (2009) Bendamustine hydrochloride - a renaissance of alkylating strategies in anticancer medicine. Drugs Today (Barc), 45:431-44
    link to pubmed

  35. Domschke, C., Schuetz, F., Sommerfeldt, N., Rom, J., Scharf, A., Sohn, C., Schneeweiss, A., Beckhove, P., (2009) Effects of distant metastasis and peripheral CA 15-3 on the induction of spontaneous T cell responses in breast cancer patients. Cancer Immunol Immunother, 59:479-86
    link to pubmed

  36. Domschke, C., Schuetz, F., Ge, Y., Seibel, T., Falk, C., Brors, B., Vlodavsky, I., Sommerfeldt, N., Sinn, H. P., Kuhnle, M. C., Schneeweiss, A., Scharf, A., Sohn, C., Schirrmacher, V., Moldenhauer, G., Momburg, F., Beckhove, P., (2009) Intratumoral cytokines and tumor cell biology determine spontaneous breast cancer-specific immune responses and their correlation to prognosis. Cancer Res, 69:8420-8
    link to pubmed

  37. Chan, S., Romieu, G., Huober, J., Delozier, T., Tubiana-Hulin, M., Schneeweiss, A., Lluch, A., Llombart, A., du Bois, A., Kreienberg, R., Mayordomo, J. I., Anton, A., Harrison, M., Jones, A., Carrasco, E., Vaury, A. T., Frimodt-Moller, B., Fumoleau, P., (2009) Phase III study of gemcitabine plus docetaxel compared with capecitabine plus docetaxel for anthracycline-pretreated patients with metastatic breast cancer. J Clin Oncol, 27:1753-60
    link to pubmed

  38. Calabro, A., Beissbarth, T., Kuner, R., Stojanov, M., Benner, A., Asslaber, M., Ploner, F., Zatloukal, K., Samonigg, H., Poustka, A., Sultmann, H., (2009) Effects of infiltrating lymphocytes and estrogen receptor on gene expression and prognosis in breast cancer. Breast Cancer Res Treat, 116:69-77
    link to pubmed

  39. Bartz, F., Kern, L., Erz, D., Zhu, M., Gilbert, D., Meinhof, T., Wirkner, U., Erfle, H., Muckenthaler, M., Pepperkok, R., Runz, H., (2009) Identification of cholesterol-regulating genes by targeted RNAi screening. Cell Metab, 10:63-75
    link to pubmed

  40. Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J., Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K. O., Barrero, R. A., Gough, C., Chun, H. W., Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P. B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A. O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K. B., Lin, Y. C., Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., O'Donovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M. A., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M. A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N. S., Yoo, H. S., De Souza, S. J., Bonaldo Mde, F., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M. B., Chiusano, M. L., Suzuki, Y., Auffray, C., Yamaguchi-Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T., Gojobori, T., (2008) The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res, 36:D793-799
    link to pubmed

  41. Westermann, F., Muth, D., Benner, A., Bauer, T., Henrich, K. O., Oberthuer, A., Brors, B., Beissbarth, T., Vandesompele, J., Pattyn, F., Hero, B., Konig, R., Fischer, M., Schwab, M., (2008) Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas. Genome Biol, 9:R150
    link to pubmed

  42. Van Laere, S., Beissbarth, T., Van der Auwera, I., Van den Eynden, G., Trinh, X. B., Elst, H., Van Hummelen, P., van Dam, P., Van Marck, E., Vermeulen, P., Dirix, L., (2008) Relapse-free survival in breast cancer patients is associated with a gene expression signature characteristic for inflammatory breast cancer. Clin Cancer Res, 14:7452-60
    link to pubmed

  43. Taylor, C. F., Field, D., Sansone, S. A., Aerts, J., Apweiler, R., Ashburner, M., Ball, C. A., Binz, P. A., Bogue, M., Booth, T., Brazma, A., Brinkman, R. R., Michael Clark, A., Deutsch, E. W., Fiehn, O., Fostel, J., Ghazal, P., Gibson, F., Gray, T., Grimes, G., Hancock, J. M., Hardy, N. W., Hermjakob, H., Julian, R. K., Jr., Kane, M., Kettner, C., Kinsinger, C., Kolker, E., Kuiper, M., Novere, N. L., Leebens-Mack, J., Lewis, S. E., Lord, P., Mallon, A. M., Marthandan, N., Masuya, H., McNally, R., Mehrle, A., Morrison, N., Orchard, S., Quackenbush, J., Reecy, J. M., Robertson, D. G., Rocca-Serra, P., Rodriguez, H., Rosenfelder, H., Santoyo-Lopez, J., Scheuermann, R. H., Schober, D., Smith, B., Snape, J., Stoeckert, C. J., Jr., Tipton, K., Sterk, P., Untergasser, A., Vandesompele, J., Wiemann, S., (2008) Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol, 26:889-96
    link to pubmed

  44. Sauermann, M., Sahin, O., Sultmann, H., Hahne, F., Blaszkiewicz, S., Majety, M., Zatloukal, K., Fuzesi, L., Poustka, A., Wiemann, S., Arlt, D., (2008) Reduced expression of vacuole membrane protein 1 affects the invasion capacity of tumor cells. Oncogene, 27:1320-6
    link to pubmed

  45. Sansone, S. A., Rocca-Serra, P., Brandizi, M., Brazma, A., Field, D., Fostel, J., Garrow, A. G., Gilbert, J., Goodsaid, F., Hardy, N., Jones, P., Lister, A., Miller, M., Morrison, N., Rayner, T., Sklyar, N., Taylor, C., Tong, W., Warner, G., Wiemann, S., (2008) The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?". Omics, 12:143-9
    link to pubmed

  46. Retz, W., Rosler, M., Kissling, C., Wiemann, S., Hunnerkopf, R., Coogan, A., Thome, J., Freitag, C., (2008) Norepinephrine transporter and catecholamine-O-methyltransferase gene variants and attention-deficit/hyperactivity disorder symptoms in adults. J Neural Transm, 115:323-9
    link to pubmed

  47. Pepperkok, R., Wiemann, S., (2008) Integrating systems biology with clinical research. Genome Biol, 9:314
    link to pubmed

  48. Mathivanan, S., Ahmed, M., Ahn, N. G., Alexandre, H., Amanchy, R., Andrews, P. C., Bader, J. S., Balgley, B. M., Bantscheff, M., Bennett, K. L., Bjorling, E., Blagoev, B., Bose, R., Brahmachari, S. K., Burlingame, A. S., Bustelo, X. R., Cagney, G., Cantin, G. T., Cardasis, H. L., Celis, J. E., Chaerkady, R., Chu, F., Cole, P. A., Costello, C. E., Cotter, R. J., Crockett, D., DeLany, J. P., De Marzo, A. M., DeSouza, L. V., Deutsch, E. W., Dransfield, E., Drewes, G., Droit, A., Dunn, M. J., Elenitoba-Johnson, K., Ewing, R. M., Van Eyk, J., Faca, V., Falkner, J., Fang, X., Fenselau, C., Figeys, D., Gagne, P., Gelfi, C., Gevaert, K., Gimble, J. M., Gnad, F., Goel, R., Gromov, P., Hanash, S. M., Hancock, W. S., Harsha, H. C., Hart, G., Hays, F., He, F., Hebbar, P., Helsens, K., Hermeking, H., Hide, W., Hjerno, K., Hochstrasser, D. F., Hofmann, O., Horn, D. M., Hruban, R. H., Ibarrola, N., James, P., Jensen, O. N., Jensen, P. H., Jung, P., Kandasamy, K., Kheterpal, I., Kikuno, R. F., Korf, U., Korner, R., Kuster, B., Kwon, M. S., Lee, H. J., Lee, Y. J., Lefevre, M., Lehvaslaiho, M., Lescuyer, P., Levander, F., Lim, M. S., Lobke, C., Loo, J. A., Mann, M., Martens, L., Martinez-Heredia, J., McComb, M., McRedmond, J., Mehrle, A., Menon, R., Miller, C. A., Mischak, H., Mohan, S. S., Mohmood, R., Molina, H., Moran, M. F., Morgan, J. D., Moritz, R., Morzel, M., Muddiman, D. C., Nalli, A., Navarro, J. D., Neubert, T. A., Ohara, O., Oliva, R., Omenn, G. S., Oyama, M., Paik, Y. K., Pennington, K., Pepperkok, R., Periaswamy, B., Petricoin, E. F., Poirier, G. G., Prasad, T. S., Purvine, S. O., Rahiman, B. A., Ramachandran, P., Ramachandra, Y. L., Rice, R. H., Rick, J., Ronnholm, R. H., Salonen, J., Sanchez, J. C., Sayd, T., Seshi, B., Shankari, K., Sheng, S. J., Shetty, V., Shivakumar, K., Simpson, R. J., Sirdeshmukh, R., Siu, K. W., Smith, J. C., Smith, R. D., States, D. J., Sugano, S., Sullivan, M., Superti-Furga, G., Takatalo, M., Thongboonkerd, V., Trinidad, J. C., Uhlen, M., Vandekerckhove, J., Vasilescu, J., Veenstra, T. D., Vidal-Taboada, J. M., Vihinen, M., Wait, R., Wang, X., Wiemann, S., Wu, B., Xu, T., Yates, J. R., Zhong, J., Zhou, M., Zhu, Y., Zurbig, P., Pandey, A., (2008) Human Proteinpedia enables sharing of human protein data. Nat Biotechnol, 26:164-7
    link to pubmed

  49. Lobke, C., Laible, M., Rappl, C., Ruschhaupt, M., Sahin, O., Arlt, D., Wiemann, S., Poustka, A., Sultmann, H., Korf, U., (2008) Contact spotting of protein microarrays coupled with spike-in of normalizer protein permits time-resolved analysis of ERBB receptor signaling. Proteomics, 8:1586-94
    link to pubmed

  50. Korf, U., Henjes, F., Schmidt, C., Tresch, A., Mannsperger, H., Lobke, C., Beissbarth, T., Poustka, A., (2008) Antibody microarrays as an experimental platform for the analysis of signal transduction networks. Adv Biochem Eng Biotechnol, 110:153-75
    link to pubmed

  51. Korf, U., Derdak, S., Tresch, A., Henjes, F., Schumacher, S., Schmidt, C., Hahn, B., Lehmann, W. D., Poustka, A., Beissbarth, T., Klingmuller, U., (2008) Quantitative protein microarrays for time-resolved measurements of protein phosphorylation. Proteomics, 8:4603-12
    link to pubmed

  52. Kohl, T., Schmidt, C., Wiemann, S., Poustka, A., Korf, U., (2008) Automated production of recombinant human proteins as resource for proteome research. Proteome Science, 6:4
    link to pubmed

  53. Kissling, C., Retz, W., Wiemann, S., Coogan, A. N., Clement, R. M., Hunnerkopf, R., Conner, A. C., Freitag, C. M., Rosler, M., Thome, J., (2008) A polymorphism at the 3'-untranslated region of the CLOCK gene is associated with adult attention-deficit hyperactivity disorder. Am J Med Genet B Neuropsychiatr Genet, 147:333-8
    link to pubmed

  54. Hahne, F, Mehrle, A, Arlt, D. H., Poustka, A, Wiemann, S, Beissbarth, T., (2008) Extending pathways based on gene lists using InterPro domain signatures. BMC Bioinformatics, 9:3
    link to pubmed

  55. Frohlich, H., Fellmann, M., Sultmann, H., Poustka, A., Beissbarth, T., (2008) Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data. Bioinformatics, 24:2650-6
    link to pubmed

  56. Frohlich, H., Fellmann, M., Sultmann, H., Poustka, A., Beissbarth, T., (2008) Predicting pathway membership via domain signatures. Bioinformatics, 24:2137-42
    link to pubmed

  57. Frohlich, H., Beissbarth, T., Tresch, A., Kostka, D., Jacob, J., Spang, R., Markowetz, F., (2008) Analyzing gene perturbation screens with nested effects models in R and bioconductor. Bioinformatics, 24:2549-50
    link to pubmed

[LOGIN]